Y. Xu, M.J. Barter, D.C. Swan, K.S. Rankin, A.D. Rowan, M. Santibanez-Koref, J. Loughlin,D.A. Young (2012) Identification of the pathogenic pathways in osteoarthritic hip cartilage: commonality and discord between hip and knee OA Osteoarthritis and Cartilage – 04 July 2012 (10.1016/j.joca.2012.05.006) [PubMed]
Patience Cole-Ezea, Dan Swan, Daryl Shanley, John Hesketh (2012) Glutathione Peroxidase 4 has a major role in protecting mitochondria from oxidative damage and maintaining oxidative phosphorylation complexes in gut epithelial cells. Free Radical Biology and Medicine http://dx.doi.org/10.1016/j.freeradbiomed.2012.05.029
Arthur G Pratt, Daniel C Swan, Sarah Richardson, Gillian Wilson, Catharien MU Hilkens, David A Young, John D Issacs (2012) A CD4 T cell gene signature for early rheumatoid arthritis implicates interleukin 6-mediated STAT3 signalling, particularly in anti-citrullinated peptide antibody-negative disease. Annals of the Rhumatic Diseases. First published online April 24th 2012. doi: 10.1136/annrheumdis-2011-200968.
Alexandra Groom, Catherine Potter, Daniel C Swan, Ghazaleh Fatemifar, David M Evans, Susan M Ring, Valerie Turcot, Mark S Pearce, Nicholas D Embleton, George Davey, Smith, John C Mathers, Caroline L Relton. Postnatal Growth and DNA Methylation Are Associated With Differential Gene Expression of the TACSTD2 Gene and Childhood Fat MassDiabetes (impact factor: 8.51). 12/2011; DOI: 10.2337/db11-1039 [PubMed]
Bolser DM, Chibon PY, Palopoli N, Gong S, Jacob D, Angel VD, Swan D, Bassi S, González V, Suravajhala P, Hwang S, Romano P, Edwards R, Bishop B, Eargle J, Shtatland T, Provart NJ, Clements D, Renfro DP, Bhak D, Bhak J. MetaBase–the wiki-database of biological databases. Nucl. Acids Res. (2011) doi: 10.1093/nar/gkr1099
Parnell LD, Lindenbaum P, Shameer K, Dall’Olio GM, Swan DC, et al. BioStar: An Online Question & Answer Resource for the Bioinformatics Community. PLoS Comput Biol 7(10): e1002216. 2011 doi:10.1371/journal.pcbi.1002216
Browning AC, Halligan EP, Stewart EA, Swan DC, Dove R, Samaranayake GJ, Amoaku WM. Comparative gene expression profiling of human umbilical vein endothelial cells and ocular vascular endothelial cells. Br J Ophthalmol. 2011 Oct 25. PubMed
Werner A, Swan D. What are natural antisense transcripts good for? Biochem Soc Trans. 2010 Aug 1;38(4):1144-9. PubMed
Daniels DJ, Clothier C, Swan DC, Saretzki G. Immediate and gradual gene expression changes in telomerase over-expressing fibroblasts. Biochem Biophys Res Commun. 2010 Jul 15 PubMed
Varanasi SS, Olstad OK, Swan DC, Sanderson P, Gautvik VT, Reppe S, Francis RM, Gautvik KM, and Datta HK. Skeletal site-related variation in human trabecular bone transcriptome and signaling.PLoS One 2010 May 18; 5(5) PubMed
Andrews E, Armstrong M, Tugwood J, Swan D, Glaves P, Pirmohamed M, Aithal GP, Wright MC, Day CP, Daly AK (2010) A role for the pregnane X receptor in flucloxacillin-induced liver injury. Hepatology. 51: 1656-1664. PubMed
Ince RA, Petersen RS, Swan DC, Panzeri S. (2009) Python for information theoretic analysis of neural data. Front Neuroinformatics. 3: 4. Pubmed
Mark Carlile, Daniel Swan, Kelly Jackson, Keziah Preston-Fayers, Benoit Ballester, Paul Flicek and Andreas Werner (2009) Strand selective generation of endo-siRNAs from the Na/phosphate transporter gene Slc34a1 in murine tissues Nucleic Acids Research, February 23, doi:10.1093/nar/gkp088 Pubmed
M Hong, K R Ryan, P D Arkwright, A R Gennery, C Costigan, M Dominguez, D W Denning, V McConnell, A J Cant, M Abinun, G P Spickett, D C Swan, C S Gillespie, D A Young, D Lilic (2009) Pattern recognition receptor expression is not impaired in patients with chronic mucocutanous candidiasis with or without autoimmune polyendocrinopathy candidiasis ectodermal dystrophy. Clinical and experimental immunology (22 January) Pubmed
Werner A, Carlile M, Swan D. (2009) What do natural antisense transcripts regulate?RNA Biol. 2;6(1) Pubmed
Jackson KA, Valentine RA, McKay JA, Swan DC, Mathers JC, Ford D. (2008) Analysis of differential gene-regulatory responses to zinc in human intestinal and placental cell lines. Br J Nutr. : 1-10. Pubmed
Greenall A, Lei G, Swan DC, James K, Wang L, Peters H, Wipat A, Wilkinson DJ, Lydall D. (2008) A genome wide analysis of the response to uncapped telomeres in budding yeast reveals a novel role for the NAD+ biosynthetic gene BNA2 in chromosome end protection. Genome Biol. 9: R146. Pubmed
Waterhouse JC, Swan DC, Russell RR. (2007) Comparative genome hybridization of Streptococcus mutans strains. Oral Microbiol Immunol. 22: 103-110. PubMed
Field D, Tiwari B, Booth T, Houten S, Swan D, Bertrand N, Thurston M. (2006) Open software for biologists: from famine to feast. Nat Biotechnol. 24: 801-803. Pubmed
Allotey RA, Mohan V, McDermott MF, Deepa R, Premalatha G, Hassan Z, Cassell PG, North BV, Vaxillaire M, Mein CA, Swan DC, O’Grady E, Ramachandran A, Snehalatha C, Sinnot PJ, Hemmatpour SK, Froguel P, and Hitman GA. The EIF2AK3 gene region and type I diabetes in subjects from South India. Genes Immun 2004 Dec; 5(8) 648-52.doi:10.1038/sj.gene.6364139 pmid:15483661. PubMed
Aganna E, Martinon F, Hawkins PN, Ross JB, Swan DC, Booth DR, Lachmann HJ, Bybee A, Gaudet R, Woo P, Feighery C, Cotter FE, Thome M, Hitman GA, Tschopp J, and McDermott MF. Association of mutations in the NALP3/CIAS1/PYPAF1 gene with a broad phenotype including recurrent fever, cold sensitivity, sensorineural deafness, and AA amyloidosis. Arthritis Rheum 2002 Sep; 46(9) 2445-52. doi:10.1002/art.10509 pmid:12355493. PubMed
Korbonits M, Gueorguiev M, O’Grady E, Lecoeur C, Swan DC, Mein CA, Weill J, Grossman AB, and Froguel P. A variation in the ghrelin gene increases weight and decreases insulin secretion in tall, obese children. J Clin Endocrinol Metab 2002 Aug; 87(8) 4005-8. pmid:12161552. PubMed
Merry CL, Bullock SL, Swan DC, Backen AC, Lyon M, Beddington RS, Wilson VA, and Gallagher JT. The molecular phenotype of heparan sulfate in the Hs2st-/- mutant mouse. J Biol Chem 2001 Sep 21; 276(38) 35429-34. doi:10.1074/jbc.M100379200 pmid:11457822. PubMed
Episkopou V, Arkell R, Timmons PM, Walsh JJ, Andrew RL, and Swan D. Induction of the mammalian node requires Arkadia function in the extraembryonic lineages.Nature 2001 Apr 12; 410(6830) 825-30. doi:10.1038/35071095 pmid:11298452.PubMed